PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G137400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 244aa    MW: 26637.9 Da    PI: 6.899
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G137400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.82.8e-3643141198
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq e 
  Manes.09G137400.1.p  43 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRHEAVVTISYEAQARLSDPVYGCVSTILALQQQAEL 132
                          7***********************9989************************************************************99 PP

               DUF260  90 lkaelallk 98 
                          + ++++l++
  Manes.09G137400.1.p 133 AMVQTQLIN 141
                          998887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.30842144IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3643140IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAEPQCDATS DTRRKGIGKR ASAVPVESQS VAETGLPVPA VAPCGACKFL RRKCISGCIF  60
APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPMNRRHEA VVTISYEAQA RLSDPVYGCV  120
STILALQQQA ELAMVQTQLI NSRFAMANVL ENSQQQQQQQ QQLHHQHQQV SLLQPAYSNN  180
SSASTNLINM SNFTSNFELV TDTAPSSHSL EPLHLSRPSH DEEDDEEESR IPGIFADVIL  240
HRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525698.11e-123PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV31e-76LBD20_ARATH; LOB domain-containing protein 20
TrEMBLB9SI791e-123B9SI79_RICCO; LOB domain-containing protein, putative
STRINGPOPTR_0013s06070.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.18e-74LOB domain-containing protein 20